------------------------------------------------------------------------------------- (rtest): Running Test 6 (2D, inviscid, thermochemical nonequilibrium flow over a cylinder) -------------------------------------------------------------------------------------  Initializing $Id: physics.C 23608 2011-09-09 21:14:34Z roystgnr $ Initializing Properties Databases ----------------------------- | Flowfield Mesh Information: | ----------------------------- Mesh Information: mesh_dimension()=2 spatial_dimension()=3 n_nodes()=1891 n_local_nodes()=258 n_elem()=1800 n_local_elem()=225 n_active_elem()=1800 n_subdomains()=1 n_processors()=8 processor_id()=0 -------------------------- | Boundary ID Information: | -------------------------- Side Boundary conditions: ------------------------- (ID, number of sides) (0, 60) (1, 60) (4, 60) Initializing $Id: comp_ns.C 22870 2011-08-15 12:10:42Z roystgnr $ --------------------------- | Boundary Mesh Information: | --------------------------- Mesh Information: mesh_dimension()=1 spatial_dimension()=3 n_nodes()=0 n_local_nodes()=0 n_elem()=0 n_local_elem()=0 n_active_elem()=0 n_subdomains()=0 n_processors()=8 processor_id()=0 ModelDimensions::Thermochemistry::n_species() = 5 ModelDimensions::Thermochemistry::n_energies() = 2 Constructing LaminarFlowTurbulenceModel... Using libMesh NewtonSolver >>> Restarting from restart.xdr assembling boundary projection system Writing output 0 Running $Id: physics.C 23608 2011-09-09 21:14:34Z roystgnr $ ----- time step 0, dt=0.0001, time=0.0001 ----- Nonlinear solver reached maximum step 1, latest evaluated residual 1.03514e-09 Continuing... NL conv: |u|_oo = 5.917250e+04 |du|_2 = 3.858080e-07 |du|_oo = 5.374386e-08 |du/dt|_oo = 5.374386e-04 ~~~ Cumulative Walltime: 5.842490e-01 ~~~ ----- time step 1, dt=1.000000e-04, time=2.000000e-04 ----- Nonlinear solver reached maximum step 1, latest evaluated residual 7.732545e-10 Continuing... NL conv: |u|_oo = 5.917250e+04 |du|_2 = 2.875840e-07 |du|_oo = 4.006506e-08 |du/dt|_oo = 4.006506e-04 ~~~ Cumulative Walltime: 1.164730e+00 ~~~ ----- time step 2, dt=1.000000e-04, time=3.000000e-04 ----- Nonlinear solver reached maximum step 1, latest evaluated residual 5.739376e-10 Continuing... NL conv: |u|_oo = 5.917250e+04 |du|_2 = 2.143800e-07 |du|_oo = 2.984234e-08 |du/dt|_oo = 2.984234e-04 ~~~ Cumulative Walltime: 1.746531e+00 ~~~ ----- time step 3, dt=1.000000e-04, time=4.000000e-04 ----- Nonlinear solver reached maximum step 1, latest evaluated residual 4.300960e-10 Continuing... NL conv: |u|_oo = 5.917250e+04 |du|_2 = 1.603646e-07 |du|_oo = 2.235538e-08 |du/dt|_oo = 2.235538e-04 ~~~ Cumulative Walltime: 2.328257e+00 ~~~ ----- time step 4, dt=1.000000e-04, time=5.000000e-04 ----- Nonlinear solver reached maximum step 1, latest evaluated residual 3.206875e-10 Continuing... ~~~ Scaling new time step by 1.000000e+00 ~~~ NL conv: |u|_oo = 5.917250e+04 |du|_2 = 1.195666e-07 |du|_oo = 1.659646e-08 |du/dt|_oo = 1.659646e-04 ~~~ Cumulative Walltime: 2.908802e+00 ~~~ ----- time step 5, dt=1.000000e-04, time=6.000000e-04 ----- Nonlinear solver reached maximum step 1, latest evaluated residual 2.389658e-10 Continuing... NL conv: |u|_oo = 5.917250e+04 |du|_2 = 8.899825e-08 |du|_oo = 1.243461e-08 |du/dt|_oo = 1.243461e-04 ~~~ Cumulative Walltime: 3.494543e+00 ~~~ ----- time step 6, dt=1.000000e-04, time=7.000000e-04 ----- Nonlinear solver reached maximum step 1, latest evaluated residual 1.782832e-10 Continuing... NL conv: |u|_oo = 5.917250e+04 |du|_2 = 6.649441e-08 |du|_oo = 9.276846e-09 |du/dt|_oo = 9.276846e-05 ~~~ Cumulative Walltime: 4.077624e+00 ~~~ ----- time step 7, dt=1.000000e-04, time=8.000000e-04 ----- Nonlinear solver reached maximum step 1, latest evaluated residual 1.328944e-10 Continuing... NL conv: |u|_oo = 5.917250e+04 |du|_2 = 4.968950e-08 |du|_oo = 6.912160e-09 |du/dt|_oo = 6.912160e-05 ~~~ Cumulative Walltime: 4.660109e+00 ~~~ ----- time step 8, dt=1.000000e-04, time=9.000000e-04 ----- Nonlinear solver reached maximum step 1, latest evaluated residual 9.997030e-11 Continuing... NL conv: |u|_oo = 5.917250e+04 |du|_2 = 3.717428e-08 |du|_oo = 5.096808e-09 |du/dt|_oo = 5.096808e-05 ~~~ Cumulative Walltime: 5.243468e+00 ~~~ ----- time step 9, dt=1.000000e-04, time=1.000000e-03 ----- Nonlinear solver reached maximum step 1, latest evaluated residual 7.359403e-11 Continuing... ~~~ Scaling new time step by 1.000000e+00 ~~~ NL conv: |u|_oo = 5.917250e+04 |du|_2 = 2.762810e-08 |du|_oo = 3.867171e-09 |du/dt|_oo = 3.867171e-05 ~~~ Cumulative Walltime: 5.826613e+00 ~~~ assembling boundary projection system Writing output 1 ----- time step 10, dt=1.000000e-04, time=1.100000e-03 ----- Nonlinear solver reached maximum step 1, latest evaluated residual 5.561303e-11 Continuing... NL conv: |u|_oo = 5.917250e+04 |du|_2 = 2.081384e-08 |du|_oo = 2.935849e-09 |du/dt|_oo = 2.935849e-05 ~~~ Cumulative Walltime: 6.757221e+00 ~~~ ------------------------------------------------------------------- | Processor id: 0 | | Num Processors: 8 | | Time: Tue Oct 4 09:24:57 2011 | | OS: Linux | | HostName: navier.pecos | | OS Release: 2.6.18-164.11.1.el5_lustre.1.8.3 | | OS Version: #1 SMP Fri Apr 9 18:00:39 MDT 2010 | | Machine: x86_64 | | Username: roystgnr | | Configuration: ./configure run on Mon Oct 3 11:04:17 CDT 2011 | ------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------- | Physics Performance: Alive time=6.76275, Active time=6.75933 | ----------------------------------------------------------------------------------------------------------- | Event nCalls Total Time Avg Time Total Time Avg Time % of Active Time | | w/o Sub w/o Sub With Sub With Sub w/o S With S | |-----------------------------------------------------------------------------------------------------------| | | | run() 1 6.7593 6.759327 6.7593 6.759327 100.00 100.00 | ----------------------------------------------------------------------------------------------------------- | Totals: 1 6.7593 100.00 | ----------------------------------------------------------------------------------------------------------- Finalizing $Id: physics.C 23608 2011-09-09 21:14:34Z roystgnr $ ---------------------------------------------------------------------------------------------------------------- | libMesh Performance: Alive time=7.89504, Active time=7.50728 | ---------------------------------------------------------------------------------------------------------------- | Event nCalls Total Time Avg Time Total Time Avg Time % of Active Time | | w/o Sub w/o Sub With Sub With Sub w/o S With S | |----------------------------------------------------------------------------------------------------------------| | | | Mesh Setup 1 0.0019 0.001870 0.0240 0.023976 0.02 0.32 | | output() 2 0.0286 0.014297 0.5427 0.271375 0.38 7.23 | | solve() 11 0.0007 0.000064 6.3613 0.578299 0.01 84.73 | | | | BoundaryInfo | | sync() 1 0.0002 0.000246 0.0006 0.000557 0.00 0.01 | | | | DofMap | | add_neighbors_to_send_list() 4 0.0008 0.000202 0.0010 0.000255 0.01 0.01 | | compute_sparsity() 2 0.0144 0.007191 0.0165 0.008257 0.19 0.22 | | create_dof_constraints() 4 0.0023 0.000574 0.0023 0.000574 0.03 0.03 | | distribute_dofs() 4 0.0033 0.000823 0.0183 0.004572 0.04 0.24 | | dof_indices() 35088 0.0329 0.000001 0.0329 0.000001 0.44 0.44 | | prepare_send_list() 4 0.0001 0.000026 0.0001 0.000026 0.00 0.00 | | reinit() 4 0.0129 0.003234 0.0129 0.003234 0.17 0.17 | | | | EquationSystems | | build_solution_vector() 2 0.0104 0.005197 0.0190 0.009515 0.14 0.25 | | read() 1 0.4520 0.452028 0.4787 0.478684 6.02 6.38 | | update() 1 0.0002 0.000184 0.0002 0.000184 0.00 0.00 | | write() 2 0.3334 0.166719 0.3433 0.171658 4.44 4.57 | | | | FE | | compute_face_map() 23287 0.0777 0.000003 0.1611 0.000007 1.03 2.15 | | compute_map() 28687 0.0270 0.000001 0.0270 0.000001 0.36 0.36 | | compute_shape_functions() 28687 0.0135 0.000000 0.0135 0.000000 0.18 0.18 | | init_face_shape_functions() 11 0.0000 0.000002 0.0000 0.000002 0.00 0.00 | | init_shape_functions() 23311 0.0781 0.000003 0.0781 0.000003 1.04 1.04 | | inverse_map() 46574 0.0782 0.000002 0.0782 0.000002 1.04 1.04 | | | | GMVIO | | write_nodal_data() 2 0.1178 0.058877 0.1178 0.058877 1.57 1.57 | | | | Matrix Assembly | | closing 11 0.0266 0.002417 0.0266 0.002417 0.35 0.35 | | | | Mesh | | find_neighbors() 2 0.0025 0.001241 0.0025 0.001255 0.03 0.03 | | renumber_nodes_and_elem() 4 0.0001 0.000026 0.0001 0.000026 0.00 0.00 | | | | MeshCommunication | | assign_global_indices() 3 0.0495 0.016513 0.0510 0.016998 0.66 0.68 | | compute_hilbert_indices() 1 0.0037 0.003681 0.0037 0.003681 0.05 0.05 | | find_global_indices() 1 0.0004 0.000388 0.0050 0.005046 0.01 0.07 | | parallel_sort() 1 0.0004 0.000426 0.0007 0.000717 0.01 0.01 | | | | MeshOutput | | write_equation_systems() 2 0.0000 0.000022 0.1368 0.068415 0.00 1.82 | | | | MetisPartitioner | | partition() 1 0.0035 0.003458 0.0085 0.008521 0.05 0.11 | | | | NewtonSolver | | solve() 11 0.2499 0.022722 6.3604 0.578221 3.33 84.72 | | | | Parallel | | allgather() 151 0.0047 0.000031 0.0049 0.000032 0.06 0.06 | | broadcast() 1279 0.0059 0.000005 0.0058 0.000005 0.08 0.08 | | gather() 466 0.0049 0.000011 0.0049 0.000011 0.07 0.07 | | max(bool) 46 0.1334 0.002901 0.1334 0.002901 1.78 1.78 | | max(scalar) 39 0.0008 0.000021 0.0008 0.000021 0.01 0.01 | | max(vector) 4 0.0000 0.000007 0.0000 0.000007 0.00 0.00 | | min(vector) 4 0.0002 0.000061 0.0002 0.000061 0.00 0.00 | | probe() 252 0.0010 0.000004 0.0010 0.000004 0.01 0.01 | | receive() 3964 0.0046 0.000001 0.0057 0.000001 0.06 0.08 | | send() 716 0.0014 0.000002 0.0014 0.000002 0.02 0.02 | | send_receive() 266 0.0007 0.000003 0.0034 0.000013 0.01 0.05 | | sum() 57 0.0238 0.000418 0.0238 0.000418 0.32 0.32 | | wait() 252 0.0001 0.000000 0.0001 0.000000 0.00 0.00 | | | | Partitioner | | set_node_processor_ids() 3 0.0006 0.000193 0.0012 0.000415 0.01 0.02 | | set_parent_processor_ids() 1 0.0001 0.000143 0.0001 0.000143 0.00 0.00 | | | | PetscLinearSolver | | solve() 13 0.4103 0.031560 0.4103 0.031560 5.47 5.47 | | | | Residual Assembly | | boundary residual 22484 1.5465 0.000069 1.8249 0.000081 20.60 24.31 | | compute stabilization nodal data 11 0.0371 0.003373 0.4242 0.038567 0.49 5.65 | | init DCO 2925 0.4284 0.000146 0.4284 0.000146 5.71 5.71 | | init nodal data 11 0.0225 0.002042 0.0225 0.002042 0.30 0.30 | | | | Residual+Jacobian Assembly | | compute AiAj 39600 0.2281 0.000006 0.2281 0.000006 3.04 3.04 | | compute AiVj 39600 0.0947 0.000002 0.0947 0.000002 1.26 1.26 | | compute system 2475 1.5631 0.000632 1.8949 0.000766 20.82 25.24 | | init data 2475 1.3613 0.000550 1.3613 0.000550 18.13 18.13 | | | | System | | assemble() 2 0.0005 0.000225 0.0005 0.000225 0.01 0.01 | | solve() 11 0.0001 0.000013 6.3606 0.578234 0.00 84.73 | | | | XdrIO | | read() 1 0.0093 0.009272 0.0095 0.009546 0.12 0.13 | ---------------------------------------------------------------------------------------------------------------- | Totals: 302835 7.5073 100.00 | ---------------------------------------------------------------------------------------------------------------- Successful exit Run complete ------------------------------------------------------------------------------------- (rtest): Running Solution Diff ------------------------------------------------------------------------------------- Solution vectors are equivalent to within tolerance = 5.0000000000000001e-09 Solution relative difference = 1.2050257929565460e-14 Successful exit Run complete ------------------------------------------------------------------------------------- (rtest): PASSED: Test 6 (2D, inviscid, thermochemical nonequilibrium flow over a cylinder) -------------------------------------------------------------------------------------